Automatic prompt optimization (APO) has driven significant gains in LLM-based agentic workflows. However, existing methods treat each task's prompt as a monolithic, instance-blind string optimized through global edits, producing brittle updates and preventing the reuse of learned sub-behaviors. We propose Prompt Codebooks (PCO), a novel compositional prompt optimization framework that recasts APO as discrete learning over a finite vocabulary of natural-language instincts - atomic, reusable instruction units. PCO organizes prompt-construction knowledge in a discrete codebook and routes each input to a small subset of entries via an LLM-based encoder; a generator composes them into a prompt for the frozen target model; a critic emits a structured verdict that decomposes by attribution into per-variable textual gradients, jointly training the encoder, generator, and codebook under a language-valued min-max objective. The resulting routing is per-instance: different inputs in the same task receive different instinct compositions, a regime structurally inexpressible under instance-blind methods. Across six benchmarks on Qwen3-8B and LLaMA-3.1-8B, PCO improves over zero-shot by up to +30.36 points, surpasses the strongest prior baseline (GEPA) by +3.34 on HotpotQA and +1.11 in aggregate, and reduces deployed prompt length by up to 14.1x versus MIPROv2 and 3.0x versus GEPA using only K=16 instincts.