Neural-guided Ant Colony Optimization (ACO) suffers from a fundamental training-inference misalignment: policies are typically trained to generate static priors (e.g., heatmaps), yet deployed to guide iterative, long-horizon search processes. In this paper, we present DyNACO, a novel framework that achieves dynamic neural guidance by periodically observing the pheromone distribution and the incumbent solution. To make DyNACO tractable at scale, we pair the policy with a perturbation-based ACO backend and a scope-restricted refinement mechanism that jointly ensure efficacy and stable credit assignment. On TSP, DyNACO scales to 100,000-node instances and outperforms neural baselines while often reducing total runtime compared to the unguided solver. We extend DyNACO to CVRP via a capacity-aware backend, consistently improving the unguided baseline with less than 1% neural overhead. We further provide in-depth analysis validating the model's generalization capabilities and elucidating why dynamic guidance outperforms static priors. Our work underscores the necessity of aligning neural training with iterative search dynamics in learning-guided optimization. The code is available at https://github.com/shoraaa/DyNACO.