The Internet of Things (IoT) has revolutionized various applications including agriculture, but it still faces challenges in data collection and understanding. This paper proposes a real-time framework with three additional semantic layers to help IoT devices and sensors comprehend data meaning and source. The framework consists of six layers: perception, semantic annotation, interoperability, transportation, semantic reasoning, and application, suitable for dynamic environments. Sensors collect data in the form of voltage, which is then processed by microprocessors or microcontrollers in the semantic annotation and preprocessing layer. Metadata is added to the raw data, including the purpose, ID number, and application. Two semantic algorithms are proposed in the semantic interoperability and ontologies layer: the interoperability semantic algorithm for standardizing file types and the synonym identification algorithm for identifying synonyms. In the transportation layer, raw data and metadata are sent to other IoT devices or cloud computing platforms using techniques like WiFi, Zigbee networks, Bluetooth, and mobile communication networks. A semantic reasoning layer is proposed to infer new knowledge from the existing data, using fuzzy logic, Dempster-Shafer theory, and Bayesian networks. A Graphical User Interface (GUI) is proposed in the application layer to help users communicate with and monitor IoT sensors, devices, and new knowledge inferred. This framework provides a robust solution for managing IoT data, ensuring semantic completeness, and enabling real-time knowledge inference. The integration of uncertainty reasoning methods and semantic interoperability techniques makes this framework a valuable tool for advancing IoT applications in general and in agriculture in particular.