Neural Quantum States (NQS) are powerful variational representations of quantum many-body wavefunctions, yet their performance depends sensitively on the chosen basis. Using an exactly solvable one-dimensional Ising model, we show that local basis rotations leave the minimization landscape unchanged while relocating the exact ground state in parameter space. This provides a controlled framework to disentangle representational limitations from optimization-induced trainability effects. This geometric displacement, quantified through information-geometric measures, can steer optimization of shallow architectures toward saddle points and high-curvature regions. As a result, low energy errors may coexist with an incorrect wavefunction structure. By comparing energy and infidelity optimization within the same variational architectures, we show that optimization failure can persist even when the rotated target state remains representable. Our results identify a geometric mechanism contributing to basis dependence in NQS and motivate landscape-aware variational design.