Joint-Embedding Predictive Architectures (JEPAs), a powerful class of self-supervised models, exhibit an unexplained ability to cluster time-series data by their underlying dynamical regimes. We propose a novel theoretical explanation for this phenomenon, hypothesizing that JEPA's predictive objective implicitly drives it to learn the invariant subspace of the system's Koopman operator. We prove that an idealized JEPA loss is minimized when the encoder represents the system's regime indicator functions, which are Koopman eigenfunctions. This theory was validated on synthetic data with known dynamics, demonstrating that constraining the JEPA's linear predictor to be a near-identity operator is the key inductive bias that forces the encoder to learn these invariants. We further discuss that this constraint is critical for selecting this interpretable solution from a class of mathematically equivalent but entangled optima, revealing the predictor's role in representation disentanglement. This work demystifies a key behavior of JEPAs, provides a principled connection between modern self-supervised learning and dynamical systems theory, and informs the design of more robust and interpretable time-series models.