The Unrelated Parallel Machine Scheduling Problem (UPMSP) with release dates, setups, and eligibility constraints presents a significant multi-objective challenge. Traditional methods struggle to balance minimizing Total Weighted Tardiness (TWT) and Total Setup Time (TST). This paper proposes a Deep Reinforcement Learning framework using Proximal Policy Optimization (PPO) and a Graph Neural Network (GNN). The GNN effectively represents the complex state of jobs, machines, and setups, allowing the PPO agent to learn a direct scheduling policy. Guided by a multi-objective reward function, the agent simultaneously minimizes TWT and TST. Experimental results on benchmark instances demonstrate that our PPO-GNN agent significantly outperforms a standard dispatching rule and a metaheuristic, achieving a superior trade-off between both objectives. This provides a robust and scalable solution for complex manufacturing scheduling.