Logged forests cover four million square kilometres of the tropics and restoring these forests is essential if we are to avoid the worst impacts of climate change, yet monitoring recovery is challenging. Tracking the abundance of visually identifiable, early-successional species enables successional status and thereby restoration progress to be evaluated. Here we present a new pipeline, SLIC-UAV, for processing Unmanned Aerial Vehicle (UAV) imagery to map early-successional species in tropical forests. The pipeline is novel because it comprises: (a) a time-efficient approach for labelling crowns from UAV imagery; (b) machine learning of species based on spectral and textural features within individual tree crowns, and (c) automatic segmentation of orthomosaiced UAV imagery into 'superpixels', using Simple Linear Iterative Clustering (SLIC). Creating superpixels reduces the dataset's dimensionality and focuses prediction onto clusters of pixels, greatly improving accuracy. To demonstrate SLIC-UAV, support vector machines and random forests were used to predict the species of hand-labelled crowns in a restoration concession in Indonesia. Random forests were most accurate at discriminating species for whole crowns, with accuracy ranging from 79.3% when mapping five common species, to 90.5% when mapping the three most visually-distinctive species. In contrast, support vector machines proved better for labelling automatically segmented superpixels, with accuracy ranging from 74.3% to 91.7% for the same species. Models were extended to map species across 100 hectares of forest. The study demonstrates the power of SLIC-UAV for mapping characteristic early-successional tree species as an indicator of successional stage within tropical forest restoration areas. Continued effort is needed to develop easy-to-implement and low-cost technology to improve the affordability of project management.