When registering point clouds resolved from an underlying 2-D pixel structure, such as those resulting from structured light and flash LiDAR sensors, or stereo reconstruction, it is expected that some points in one cloud do not have corresponding points in the other cloud, and that these would occur together, such as along an edge of the depth map. In this work, a hidden Markov random field model is used to capture this prior within the framework of the iterative closest point algorithm. The EM algorithm is used to estimate the distribution parameters and the hidden component memberships. Experiments are presented demonstrating that this method outperforms several other outlier rejection methods when the point clouds have low or moderate overlap.