This work introduces the quantum-inspired variational convolution (QiVC) framework, a novel learning paradigm that integrates principles of probabilistic inference, variational optimization, and quantum-inspired transformations within convolutional architectures. The central innovation of QiVC lies in its quantum-inspired rotated ensemble (QiRE) mechanism. QiRE performs differentiable low-dimensional subspace rotations of convolutional weights, analogously to quantum state evolution. This approach enables structured uncertainty modeling while preserving the intrinsic geometry of the parameter space, resulting in more expressive, stable, and uncertainty-aware representations. To demonstrate its practical potential, the concept is instantiated in a QiVC-based convolutional network (QiVC-Net) and evaluated in the context of biosignal classification, focusing on phonocardiogram (PCG) recordings, a challenging domain characterized by high noise, inter-subject variability, and often imbalanced data. The proposed QiVC-Net integrates an architecture in which the QiVC layer does not introduce additional parameters, instead performing an ensemble rotation of the convolutional weights through a structured mechanism ensuring robustness without added highly computational burden. Experiments on two benchmark datasets, PhysioNet CinC 2016 and PhysioNet CirCor DigiScope 2022, show that QiVC-Net achieves state-of-the-art performance, reaching accuracies of 97.84% and 97.89%, respectively. These findings highlight the versatility of the QiVC framework and its promise for advancing uncertainty-aware modeling in real-world biomedical signal analysis. The implementation of the QiVConv layer is openly available in GitHub.