Natural language explanations in visual question answering (VQA-NLE) aim to make black-box models more transparent by elucidating their decision-making processes. However, we find that existing VQA-NLE systems can produce inconsistent explanations and reach conclusions without genuinely understanding the underlying context, exposing weaknesses in either their inference pipeline or explanation-generation mechanism. To highlight these vulnerabilities, we not only leverage an existing adversarial strategy to perturb questions but also propose a novel strategy that minimally alters images to induce contradictory or spurious outputs. We further introduce a mitigation method that leverages external knowledge to alleviate these inconsistencies, thereby bolstering model robustness. Extensive evaluations on two standard benchmarks and two widely used VQA-NLE models underscore the effectiveness of our attacks and the potential of knowledge-based defenses, ultimately revealing pressing security and reliability concerns in current VQA-NLE systems.