Fall bottom trawl (fall BT) and lakewide acoustic (AC) surveys are conducted annually to generate indices of pelagic and benthic prey fish densities in Lake Michigan. The fall BT survey has been conducted each fall since 1973 using 12-m trawls at depths ranging from 9 to 110 m at fixed locations distributed across seven transects; this survey estimates densities of seven prey fish species [i.e., Alewife (Alosa pseudoharengus), Bloater (Coregonus hoyi), Rainbow Smelt (Osmerus mordax), Deepwater Sculpin (Myoxocephalus thompsonii), Slimy Sculpin (Cottus cognatus), Round Goby (Neogobius melanostomus), Ninespine Stickleback (Pungitius pungitius)]. The AC survey has been conducted each late summer/early fall since 2004 (except 2020). The 2025 AC survey consisted of 26 transects [470 km total (292 miles)] covering bottom depths ranging from 5 to 259 m and 44 midwater trawl tows at 1.4 to 82.4 m fishing depth; this survey estimates densities of three prey fish species (i.e., Alewife, Bloater, and Rainbow Smelt). The data generated from these surveys are used to estimate various population parameters that are, in turn, used by state and tribal agencies in managing Lake Michigan fish stocks.  

For the AC survey, total biomass density of prey fish equaled 9.3 kg/ha, continuing a recent trend of index values above the long-term average of 5.4 kg/ha. For the fall BT, total biomass density of prey fish equaled 3.4 kg/ha, close to values observed since 2014 and well below historic numbers and those observed earlier in the 2000s. Over the period both surveys have been conducted (2004-2025), the total biomass density index had trended downward in the fall BT through the mid-2010s and appears to have stabilized at low values, while the AC survey biomass density index has remained relatively stable over the time series.  

Mean biomass of yearling and older (YAO) Alewife was 4.3 kg/ha in the AC survey and 0.45 kg/ha in the fall BT. Since 2014, annual survey results suggest that the catchability of YAO Alewife for the fall BT is substantially lower than the AC survey. The 2025 AC survey YAO Alewife biomass density estimate was 57% higher than the average from 2004-2024. The Alewife population of Lake Michigan appears to be composed mostly of young fish and the proportion of age-4 and older Alewife was ~5% in both surveys. Age-0 Alewife numeric density from the AC survey was 259 fish/ha in 2025, lower than the long-term mean (487 fish/ha). Biomass density of large (≥120 mm) Bloater was 3.5 kg/ha in the AC survey and 1.9 kg/ha in the fall BT. The density of small (<120 mm) Bloater was 540 fish/ha in the AC survey, the second highest value in the time series.  Meanwhile, small Bloater density estimated in the fall BT was only 6.1 fish/ha. Biomass density of large Rainbow Smelt (≥90 mm) was 0.69 kg/ha in the AC survey and 0.04 kg/ha in the fall BT survey. Numeric density of small (<90 mm) Rainbow Smelt was 541 fish/ha in the AC survey, the highest value in the time series, and 41 fish/ha in the fall BT. All four prey fish species indexed only by the fall BT had below-average biomass densities. Deepwater Sculpin biomass density was 0.21 kg/ha, which makes 15 of the past 16 years with biomass <1 kg/ha. Slimy Sculpin was estimated to be 0.03 kg/ha, an order of magnitude lower than the long-term average from the fall BT. Round Goby biomass density was 0.44 kg/ha and Ninespine Stickleback density was 0.20 kg/ha, the highest value since 2007.