This paper studies the computation-communication tradeoff in a heterogeneous MapReduce computing system where each distributed node is equipped with different computation capability. We first obtain an achievable communication load for any given computation load and any given function assignment at each node. The proposed file allocation strategy has two steps: first, the input files are partitioned into disjoint batches, each with possibly different size and computed by a distinct node; then, each node computes additional files from its non-computed files according to its redundant computation capability. In the Shuffle phase, coded multicasting opportunities are exploited thanks to the repetitive file allocation among different nodes. Based on this scheme, we further propose the computation-aware and the shuffle-aware function assignments. We prove that, by using proper function assignments, our achievable communication load for any given computation load is within a constant multiplicative gap to the optimum in an equivalent homogeneous system with the same average computation load. Numerical results show that our scheme with shuffle-aware function assignment achieves better computation-communication tradeoff than existing works in some cases.