In wireless communication networks, it is difficult to solve many NP-hard problems owing to computational complexity and high cost. Recently, quantum annealing (QA) based on quantum physics was introduced as a key enabler for solving optimization problems quickly. However, only some studies consider quantum-based approaches in wireless communications. Therefore, we investigate the performance of a QA solution to an optimization problem in wireless networks. Specifically, we aim to maximize the sum rate by jointly optimizing clustering, sub-channel assignment, and power allocation in a multi-unmanned aerial vehicle-aided wireless network. We formulate the sum rate maximization problem as a combinatorial optimization problem. Then, we divide it into two sub-problems: 1) a QA-based clustering and 2) sub-channel assignment and power allocation for a given clustering configuration. Subsequently, we obtain an optimized solution for the joint optimization problem by solving these two sub-problems. For the first sub-problem, we convert the problem into a simplified quadratic unconstrained binary optimization (QUBO) model. As for the second sub-problem, we introduce a novel QA algorithm with optimal scaling parameters to address it. Simulation results demonstrate the effectiveness of the proposed algorithm in terms of the sum rate and running time.