Stroke is a leading cause of long-term disability and the second most common cause of death worldwide. Although acute treatments have advanced, recovery remains challenging and limited. Brain-computer interfaces (BCIs) have emerged as a promising tool for post-stroke rehabilitation by promoting neuroplasticity. However, clinical outcomes remain variable, and optimal protocols have yet to be established. This study explores strategies to optimize BCI-based rehabilitation by comparing motor imagery of affected hand movement versus rest, instead of the conventional left-versus-right motor imagery. This alternative aims to simplify the task and address the weak contralateral activation commonly observed in stroke patients. Two datasets, one from healthy individuals and one from stroke patients, were used to evaluate the proposed approach. The results showed improved performance using both FBCSP and EEGNet. Additionally, we investigated the impact of session duration and found that shorter training sessions produced better BCI performance than longer sessions.