Rydberg-aided atomic electrometry using alkali-metal atoms is gaining increased research interest for detecting external electric fields. However, the inability of Rydberg probes to detect phase is a serious impediment to their realistic deployment. In this paper, we derive a novel phase retrieval algorithm for use in a phased array or synthetic aperture applications where only measurements of electric field intensity are possible at each spatial sample. These array configurations exist if a Rydberg atom probe is used in place of an antenna. We employ three-stage alternating projections to solve the resulting optimization problem. Our numerical experiments demonstrate the effectiveness of the proposed algorithm in terms of beamformed array output.