Quantum key distribution (QKD) provides information-theoretic security and satellite-based quantum key distribution (SatQKD) has demonstrated the potential to extend this communication security to intercontinental scales. However, atmospheric turbulence induces significant distortion in the spatial distribution of received optical beams, while background noise remains approximately uniform across the detector plane. As a result, single-element qubit (quantum bit) detection can be frequently dominated by noise due to the random spatial pattern of the imaged wavefront, thereby degrading the system performance. To address this limitation, we propose to exploit the spatial degrees of freedom of single-photon detector arrays to reject the excessive noise while adapting to channel variations induced by turbulence. We develop a threshold-based selection method that only activates detector elements that have higher probability of registering qubits. We evaluate the performance of the proposed noise-rejection QKD schemes using Monte Carlo simulations considering the impact of diffraction and atmospheric turbulence on the transmitted optical beam in the presence of background and dark noise. The results show that, compared to conventional schemes, the proposed noise-rejection strategy effectively reduces the quantum bit error rate (QBER) and improves the secret key rate (SKR) performance, while the performance gains depend on the turbulence condition. These findings demonstrate the potential of adaptive array receiver design to enhance the robustness of the SatQKD system under realistic atmospheric conditions.