Reconfigurable intelligent surface is a potential technology component of future wireless networks due to its capability of shaping the wireless environment. The promising MIMO systems in terms of extended coverage and enhanced capacity are, however, critically dependent on the accuracy of the channel state information. However, traditional channel estimation schemes are not applicable in RIS-assisted MIMO networks, since passive RISs typically lack the signal processing capabilities that are assumed by channel estimation algorithms. This becomes most problematic when physical imperfections or electronic impairments affect the RIS due to its exposition to different environmental effects or caused by hardware limitations from the circuitry. While these real-world effects are typically ignored in the literature, in this paper we propose efficient channel estimation schemes for RIS-assisted MIMO systems taking different imperfections into account. Specifically, we propose two sets of tensor-based algorithms, based on the parallel factor analysis decomposition schemes. First, by assuming a long-term model in which the RIS imperfections, modeled as unknown phase shifts, are static within the channel coherence time we formulate an iterative alternating least squares (ALS)-based algorithm for the joint estimation of the communication channels and the unknown phase deviations. Next, we develop the short-term imperfection model, which allows both amplitude and phase RIS imperfections to be non-static with respect to the channel coherence time. We propose two iterative ALS-based and closed-form higher order singular value decomposition-based algorithms for the joint estimation of the channels and the unknown impairments. Moreover, we analyze the identifiability and computational complexity of the proposed algorithms and study the effects of various imperfections on the channel estimation quality.