Audio deepfakes generated by modern TTS and voice conversion systems are increasingly difficult to distinguish from real speech, raising serious risks for security and online trust. While state-of-the-art self-supervised models provide rich multi-layer representations, existing detectors treat layers independently and overlook temporal and hierarchical dependencies critical for identifying synthetic artefacts. We propose HierCon, a hierarchical layer attention framework combined with margin-based contrastive learning that models dependencies across temporal frames, neighbouring layers, and layer groups, while encouraging domain-invariant embeddings. Evaluated on ASVspoof 2021 DF and In-the-Wild datasets, our method achieves state-of-the-art performance (1.93% and 6.87% EER), improving over independent layer weighting by 36.6% and 22.5% respectively. The results and attention visualisations confirm that hierarchical modelling enhances generalisation to cross-domain generation techniques and recording conditions.