In this paper, we provide non-parametric statistical tools to test stationarity of microstructure noise in general hidden Ito semimartingales, and discuss how to measure liquidity risk using high frequency financial data. In particular, we investigate the impact of non-stationary microstructure noise on some volatility estimators, and design three complementary tests by exploiting edge effects, information aggregation of local estimates and high-frequency asymptotic approximation. The asymptotic distributions of these tests are available under both stationary and non-stationary assumptions, thereby enable us to conservatively control type-I errors and meanwhile ensure the proposed tests enjoy the asymptotically optimal statistical power. Besides it also enables us to empirically measure aggregate liquidity risks by these test statistics. As byproducts, functional dependence and endogenous microstructure noise are briefly discussed. Simulation with a realistic configuration corroborates our theoretical results, and our empirical study indicates the prevalence of non-stationary microstructure noise in New York Stock Exchange.