In this work, we study ergodicity of continuous time Markov processes on state space $\mathbb{R}_{\geq 0} := [0,\infty)$ obtained as unique strong solutions to stochastic equations with jumps. Our first main result establishes exponential ergodicity in the Wasserstein distance, provided the stochastic equation satisfies a comparison principle and the drift is dissipative. In particular, it is applicable to continuous-state branching processes with immigration (shorted as CBI processes), possibly with nonlinear branching mechanisms or in Lévy random environments. Our second main result establishes exponential ergodicity in total variation distance for subcritical CBI processes under a first moment condition on the jump measure for branching and a $\log$-moment condition on the jump measure for immigration.