Given a pair of second order diffusion operators, one on the total space of a principle bundle $N$ and the other on the base space $M$, intertwined by the projection $π:N\to M$, if the operator ${\mathcal A}$ on the base manifold has constant rank, we define a semi-connection on the principal bundle which allows to split the diffusion operator ${\mathcal B}$ on the total space into the sum of the horizontal lift of ${\mathcal A}$ and the other vertical. This allow to conclude a disintegration theorem for the law of ${\mathcal B}$. As an application, a decomposition of stochastic flow is given.