In this paper we are concerned with a family of $N$-urn branching processes, where some particles are put into $N$ urns initially and then each particle gives birth to several new particles in some urn when dies. This model includes the $N$-urn Ehrenfest model and the $N$-urn branching random walk as special cases. We show that the scaling limit of the process is driven by a $C(\mathbb{T})$-valued linear ordinary differential equation and the fluctuation of the process is driven by a generalized Ornstein-Uhlenbeck process in the dual of $C^\infty(\mathbb{T})$, where $\mathbb{T}=(0, 1]$ is the one-dimensional torus. A crucial step for proofs of above main results is to show that numbers of particles in different urns are approximately independent. As applications of our main results, limit theorems of hitting times of the process are also discussed.