It was recently proposed to use the human visual system's ability to perform efficient photon counting in order to devise a new biometric methodology. The relevant biometric fingerprint is represented by the optical losses light suffers along several different paths from the cornea to the retina. The fingerprint is accessed by interrogating a subject on perceiving or not weak light flashes, containing few tens of photons, so that the subject's visual system works at the threshold of perception, at which regime optical losses play a significant role. Here we show that if instead of weak laser light pulses we use quantum light sources, in particular single photon sources, we obtain a quantum advantage, which translates into a reduction of the resources required to achieve a desired performance. Besides the particular application on biometrics, our work further demonstrates that quantum light sources can provide deeper insights when studying human vision.