Data assimilation (DA) combines partial observations with dynamical models to improve state estimation. Filter-based DA uses only past and present data and is the prerequisite for real-time forecasts. Smoother-based DA exploits both past and future observations. It aims to fill in missing data, provide more accurate estimations, and develop high-quality datasets. However, the standard smoothing procedure requires using all historical state estimations, which is storage-demanding, especially for high-dimensional systems. This paper develops an adaptive-lag online smoother for a large class of complex dynamical systems with strong nonlinear and non-Gaussian features, which has important applications to many real-world problems. The adaptive lag allows the utilization of observations only within a nearby window, thus reducing computational complexity and storage needs. Online lag adjustment is essential for tackling turbulent systems, where temporal autocorrelation varies significantly over time due to intermittency, extreme events, and nonlinearity. Based on the uncertainty reduction in the estimated state, an information criterion is developed to systematically determine the adaptive lag. Notably, the mathematical structure of these systems facilitates the use of closed analytic formulae to calculate the online smoother and adaptive lag, avoiding empirical tunings as in ensemble-based DA methods. The adaptive online smoother is applied to studying three important scientific problems. First, it helps detect online causal relationships between state variables. Second, the advantage of reduced computational storage expenditure is illustrated via Lagrangian DA, a high-dimensional nonlinear problem. Finally, the adaptive smoother advances online parameter estimation with partial observations, emphasizing the role of the observed extreme events in accelerating convergence.