We study the hard-core model of statistical mechanics on a unit cubic lattice $\mathbb{Z}^3$, which is intrinsically related to the sphere-packing problem for spheres with centers in $\mathbb{Z}^3$. The model is defined by the sphere diameter $D>0$ which is interpreted as a Euclidean exclusion distance between point particles located at spheres centers. The second parameter of the underlying model is the particle fugacity $u$. For $u>1$ the ground states of the model are given by the dense-packings of the spheres. The identification of such dense-packings is a considerable challenge, and we solve it for $D^2=2, 3, 4, 5, 6, 8, 9, 10, 11, 12$ as well as for $D^2=2\ell^2$, where $\ell\in\mathbb{N}$. For the former family of values of $D^2$ our proofs are self-contained. For $D^2=2\ell^2$ our results are based on the proof of Kepler's conjecture. Depending on the value of $D^2$, we encounter three physically distinct situations: (i) finitely many periodic ground states, (ii) countably many layered periodic ground states and (iii) countably many not necessarily layered periodic ground states. For the first two cases we use the Pirogov-Sinai theory and identify the corresponding periodic Gibbs distributions for $D^2=2,3,5,8,9,10,12$ and $D^2=2\ell^2$, $\ell\in\mathbb{N}$, in a high-density regime $u>u_*(D^2)$, where the system is ordered and tends to fluctuate around some ground states. In particular, for $D^2=5$ only a finite number out of countably many layered periodic ground states generate pure phases.