We show that counts of squarefree integers up to $X$ in short intervals of size $H$ tend to a Gaussian distribution as long as $H\rightarrow\infty$ and $H = X^{o(1)}$. This answers a question posed by R.R. Hall in 1989. More generally we prove a variant of Donsker's theorem, showing that these counts scale to a fractional Brownian motion with Hurst parameter $1/4$. In fact we are able to prove these results hold in general for collections of $B$-free integers as long as the sieving set $B$ satisfies a very mild regularity property, for Hurst parameter varying with the set $B$.