The asymptotic behaviour of empirical measures has plenty of studies. However, the research on conditional empirical measures is limited. Being the development of Wang \cite{eW1}, under the quadratic Wasserstein distance, we investigate the rate of convergence of conditional empirical measures associated to subordinated Dirichlet diffusion processes on a connected compact Riemannian manifold with absorbing boundary. We give the sharp rate of convergence for any initial distribution and prove the precise limit for a large class of initial distributions. We follow the basic idea of Wang, but allow ourselves substantial deviations in the proof to overcome difficulties in our non-local setting.