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Complement Submodular Information Measures for Balanced and Robust Data Selection A Proof of a Conjecture on Positive and Negative Square Energies of Unicyclic Graphs Laplacian Spectrum of the Weakly Zero-Divisor Graph of a Finite Commutative Ring An identity for second Eulerian numbers via lattice-point counting $t$-tone edge coloring of graphs Constructing Maximal Bumpless Pipedreams for Double Grothendieck Polynomials Mubayi's Polynomial-Ideal Conjecture and Cover-Ideal Turán Methods Implicit Binarization via Complex Phase Dynamics in Combinatorial Optimization The limits of Schur multipliers in Pólya conversion problems for the $q$-permanent function Universality theorems for generalized splines Framing Triangulations for Arbitrary Integer Flow Polytopes On the Common Generalization of Gentle Algebras and Framed Directed Acyclic Graphs The complexity of frugal digraph homomorphisms Chaotic and periodic behavior of jeu de taquin on infinite Young tableaux Enumerating Pattern Avoiding Parking Functions Incidence toric ideals and three-point functions Unique Winning Opening Move in Three-Row Chomp Strong majority colorings of graphs A Balancing Theorem for Spanning Trees of Rectangular Grid Graphs Spectral radius and edge-disjoint connected factors of graphs New invariants for rank metric codes, with applications to the classification of rank two semifields of order 256 Flexible DP-4-coloring of planar graphs without 4-cycles and intersecting triangles Balanced intersection size distributions in projective planes List Reconstruction Problem with List Size Two Is Dimensionality a Barrier for Retrieval Models? The INIEP: Irreducible and Positive Realizations The number of Pfaffian orientations on punctured polygonally cellulated surfaces Explicit Construction of Polytopes whose Ehrhart Polynomials Realize any Given Sign Pattern Finite-state enumeration of adjacency-constrained 132-avoiding permutations AMDS and quantum AMDS Constacyclic codes of length $4p^ς$ over $\mathbb{F}_{{p}^{m}}$
A semi-bijective algorithm for saturated extended 2-regul...
Qianghui Guo, Yinglie Jin, Lisa H. Sun, Mingxing Weng · 2021-12-24 · via math.CO updates on arXiv.org

Combinatorics of biopolymer structures, especially enumeration of various RNA secondary structures and protein contact maps, is of significant interest for communities of both combinatorics and computational biology. However, most of the previous combinatorial enumeration results for these structures are presented in terms of generating functions, and few are explicit formulas. This paper is mainly concerned with finding explicit enumeration formulas for a particular class of biologically relevant structures, say, saturated 2-regular simple stacks, whose configuration is related to protein folds in the 2D honeycomb lattice. We establish a semi-bijective algorithm that converts saturated 2-regular simple stacks into forests of small trees, which produces a uniform formula for saturated extended 2-regular simple stacks with any of the six primary component types. Summarizing the six different primary component types, we obtain a bivariate explicit formula for saturated extended 2-regular simple stacks with $n$ vertices and $k$ arcs. As consequences, the uniform formula can be reduced to Clote's results on $k$-saturated 2-regular simple stacks and the optimal 2-regular simple stacks, and Guo et al.'s result on the optimal extended 2-regular simple stacks.