Folding subgroups give a way to realize non-simply-laced Coxeter groups as subgroups of simply-laced Coxeter groups. In this paper, we study how folding subgroups of finite and affine type are distributed length-wise by calculating the length generating function of the subgroup with respect the length of the ambient group. These generating functions have surprisingly nice formulas in terms of $q$-integers and give rise to interesting combinatorial identities on polynomials involving length statistics of both the ambient group and folding subgroup.