We introduce an explicit combinatorial characterization of the minimal model ${\cal O}_{\infty}$ of the coloured operad ${\cal O}$ encoding non-symmetric operads. In our description of ${\cal O}_{\infty}$, the spaces of operations are defined in terms of hypergraph polytopes and the composition structure generalizes the one of the $A_{\infty}$-operad. As further generalizations of this construction, we present a combinatorial description of the $W$-construction applied on ${\cal O}$, as well as of the minimal model of the coloured operad ${\cal C}$ encoding non-symmetric cyclic operads.