Recently, Alon and Frankl (JCTB, 2024) determined the maximum number of edges in $K_{\ell+1}$-free $n$-vertex graphs with bounded matching number. For integers $\ell\ge r \ge 2$, the family $\mathcal{K}_{\ell+1}^{r}$ consists of all $r$-graphs $F$ with at most $\binom{\ell+1}{2}$ edges such that, for some $(\ell+1)$-set $K$, every pair $\{x,y\} \subseteq K$ is covered by an edge in $F$. In this paper, we study the maximum number of edges in $\mathcal{K}_{\ell+1}^r$-free $r$-uniform hypergraphs that have the matching number at most $s$, that is, $\mathrm{ex}_r(n, \{\mathcal{K}_{\ell+1}^r, M^r_{s+1}\})$, and obtain the exact value for sufficiently large $n$, along with the corresponding extremal hypergraph. This result can be viewed as a hypergraph extension of the work of Alon and Frankl. In addition, for the $3$-uniform Fano plane $\mathbb{F}$, we determine the exact value of $\mathrm{ex}_3(n, \{\mathbb{F}, M^3_{s+1}\})$, and characterize the corresponding extremal hypergraph.