Let ${\mathcal C}_n$ be the set of all permutation cycles of length $n$ over $\{1,2,\ldots,n\}$. Let $${\mathfrak f}_n(q):=\sum_{σ\in{\mathcal C}_{n+1}}q^{{\mathrm maj}\,σ} $$ be a $q$-analogue of the factorial $n!$, where ${\mathrm maj}$ denotes the major index. We prove a $q$-analogue of Wilson's congruence $$ {\mathfrak f}_{n-1}(q)\equivμ(n)\pmod{Φ_n(q)}, $$ where $μ$ denotes the Möbius function and $Φ_n(q)$ is the $n$-th cyclotomic polynomial.