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Complement Submodular Information Measures for Balanced and Robust Data Selection A Proof of a Conjecture on Positive and Negative Square Energies of Unicyclic Graphs Laplacian Spectrum of the Weakly Zero-Divisor Graph of a Finite Commutative Ring An identity for second Eulerian numbers via lattice-point counting $t$-tone edge coloring of graphs Constructing Maximal Bumpless Pipedreams for Double Grothendieck Polynomials Mubayi's Polynomial-Ideal Conjecture and Cover-Ideal Turán Methods Implicit Binarization via Complex Phase Dynamics in Combinatorial Optimization The limits of Schur multipliers in Pólya conversion problems for the $q$-permanent function Universality theorems for generalized splines Framing Triangulations for Arbitrary Integer Flow Polytopes On the Common Generalization of Gentle Algebras and Framed Directed Acyclic Graphs The complexity of frugal digraph homomorphisms Chaotic and periodic behavior of jeu de taquin on infinite Young tableaux Enumerating Pattern Avoiding Parking Functions Incidence toric ideals and three-point functions Unique Winning Opening Move in Three-Row Chomp Strong majority colorings of graphs A Balancing Theorem for Spanning Trees of Rectangular Grid Graphs Spectral radius and edge-disjoint connected factors of graphs New invariants for rank metric codes, with applications to the classification of rank two semifields of order 256 Flexible DP-4-coloring of planar graphs without 4-cycles and intersecting triangles Balanced intersection size distributions in projective planes List Reconstruction Problem with List Size Two Is Dimensionality a Barrier for Retrieval Models? The INIEP: Irreducible and Positive Realizations The number of Pfaffian orientations on punctured polygonally cellulated surfaces Explicit Construction of Polytopes whose Ehrhart Polynomials Realize any Given Sign Pattern Finite-state enumeration of adjacency-constrained 132-avoiding permutations AMDS and quantum AMDS Constacyclic codes of length $4p^ς$ over $\mathbb{F}_{{p}^{m}}$
Identifying circular orders for blobs in phylogenetic net...
John A. Rhodes, Hector Banos, Jingcheng Xu, Cécile Ané · 2024-02-19 · via math.CO updates on arXiv.org

Interest in the inference of evolutionary networks relating species or populations has grown with the increasing recognition of the importance of hybridization, gene flow and admixture, and the availability of large-scale genomic data. However, what network features may be validly inferred from various data types under different models remains poorly understood. Previous work has largely focused on level-1 networks, in which reticulation events are well separated, and on a general network's tree of blobs, the tree obtained by contracting every blob to a node. An open question is the identifiability of the topology of a blob of unknown level. We consider the identifiability of the circular order in which subnetworks attach to a blob, first proving that this order is well-defined for outer-labeled planar blobs. For this class of blobs, we show that the circular order information from 4-taxon subnetworks identifies the full circular order of the blob. Similarly, the circular order from 3-taxon rooted subnetworks identifies the full circular order of a rooted blob. We then show that subnetwork circular information is identifiable from certain data types and evolutionary models. This provides a general positive result for high-level networks, on the identifiability of the ordering in which taxon blocks attach to blobs in outer-labeled planar networks. Finally, we give examples of blobs with different internal structures which cannot be distinguished under many models and data types.