For a graph $G$, a graph cubeahedron $\square_G$ and a graph associahedron $\triangle_G$ are simple convex polytopes which admit (real) toric manifolds. In this paper, we introduce a graph invariant, called the $b$-number, and we show that the $b$-numbers compute the Betti numbers of the real toric manifold $X^\mathbb{R}(\square_G)$ corresponding to a graph cubeahedron. The $b$-number is a counterpart of the notion of $a$-number, introduced by S. Choi and the second named author, which computes the Betti numbers of the real toric manifold $X^\mathbb{R}(\triangle_G)$ corresponding to a graph associahedron. We also study various relationships between $a$-numbers and $b$-numbers from a toric topological view. Interestingly, for a forest $G$ and its line graph $L(G)$, the real toric manifolds $X^\mathbb{R}(\triangle_G)$ and $X^\mathbb{R}(\square_{L(G)})$ have the same Betti numbers.