Characteristic quasi-polynomials are the enumerative functions counting the number of elements in the complement of hyperplane arrangements modulo positive integers. A notable phenomenon in this context is period collapse, where the quasi-polynomial reduces to a polynomial or has a smaller period than the lcm period. In this paper, we compute the characteristic quasi-polynomials of the restriction of the Shi arrangement of type B by one given hyperplane. As a corollary, we completely determine whether period collapse occurs in the characteristic quasi-polynomial of the deletion of the Shi arrangement of type B. This implies the solution for the conjecture posed by Higashitani, Tran and Yoshinaga in this case.