The lexicographical ordering of hypergraphs via spectral moments is called the $S$-order of hypergraphs.In this paper, the $S$-order of hypergraphs is investigated.We characterize the first and last hypergraphs in an $S$-order of all uniform hypertrees and all linear unicyclic uniformhypergraphs with given girth, respectively. And we give the last hypergraph in an $S$-order of all linear unicyclic uniform hypergraphs.