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Complement Submodular Information Measures for Balanced and Robust Data Selection A Proof of a Conjecture on Positive and Negative Square Energies of Unicyclic Graphs Laplacian Spectrum of the Weakly Zero-Divisor Graph of a Finite Commutative Ring An identity for second Eulerian numbers via lattice-point counting $t$-tone edge coloring of graphs Constructing Maximal Bumpless Pipedreams for Double Grothendieck Polynomials Mubayi's Polynomial-Ideal Conjecture and Cover-Ideal Turán Methods Implicit Binarization via Complex Phase Dynamics in Combinatorial Optimization The limits of Schur multipliers in Pólya conversion problems for the $q$-permanent function Universality theorems for generalized splines Framing Triangulations for Arbitrary Integer Flow Polytopes On the Common Generalization of Gentle Algebras and Framed Directed Acyclic Graphs The complexity of frugal digraph homomorphisms Chaotic and periodic behavior of jeu de taquin on infinite Young tableaux Enumerating Pattern Avoiding Parking Functions Incidence toric ideals and three-point functions Unique Winning Opening Move in Three-Row Chomp Strong majority colorings of graphs A Balancing Theorem for Spanning Trees of Rectangular Grid Graphs Spectral radius and edge-disjoint connected factors of graphs New invariants for rank metric codes, with applications to the classification of rank two semifields of order 256 Flexible DP-4-coloring of planar graphs without 4-cycles and intersecting triangles Balanced intersection size distributions in projective planes List Reconstruction Problem with List Size Two Is Dimensionality a Barrier for Retrieval Models? The INIEP: Irreducible and Positive Realizations The number of Pfaffian orientations on punctured polygonally cellulated surfaces Explicit Construction of Polytopes whose Ehrhart Polynomials Realize any Given Sign Pattern Finite-state enumeration of adjacency-constrained 132-avoiding permutations AMDS and quantum AMDS Constacyclic codes of length $4p^ς$ over $\mathbb{F}_{{p}^{m}}$
Network Representation and Modular Decomposition of Combi...
Anna Lindeberg, Guillaume E. Scholz, Marc Hellmuth · 2024-06-27 · via math.CO updates on arXiv.org

In phylogenetics, reconstructing rooted trees from distances between taxa is a common task. Böcker and Dress generalized this concept by introducing symbolic dated maps $δ:X \times X \to Υ$, where distances are replaced by symbols, and showed that there is a one-to-one correspondence between symbolic ultrametrics and labeled rooted phylogenetic trees. Many combinatorial structures fall under the umbrella of symbolic dated maps, such as 2-dissimilarities, symmetric labeled 2-structures, or edge-colored complete graphs, and are here referred to as strudigrams. Strudigrams have a unique decomposition into non-overlapping modules, which can be represented by a modular decomposition tree (MDT). In the absence of prime modules, strudigrams are equivalent to symbolic ultrametrics, and the MDT fully captures the relationships $δ(x,y)$ between pairs of vertices $x,y$ in $X$ through the label of their least common ancestor in the MDT. However, in the presence of prime vertices, this information is generally hidden. To provide this missing structural information, we aim to locally replace the prime vertices in the MDT to obtain networks that capture full information about the strudigrams. While starting with the general framework of prime-vertex replacement networks, we then focus on a specific type of such networks obtained by replacing prime vertices with so-called galls, resulting in labeled galled-trees. We introduce the concept of galled-tree explainable (GATEX) strudigrams, provide their characterization, and demonstrate that recognizing these structures and reconstructing the labeled networks that explain them can be achieved in polynomial time.