We revisit $R$-polynomials with introducing the new idea ``shifted $R$-polynomials" (or Bruhat weight) for all Bruhat intervals in finite Coxeter groups. Then, we apply these polynomials to weighted counting of Bruhat paths. Further, we prove a new criterion of irregularity of lower intervals as analogy of Carrell-Peterson's and Dyer's results. Also, we present the upper bound of shifted $R$-polynomials for Bruhat intervals of fixed length by Jacobsthal numbers.