惯性聚合 高效追踪和阅读你感兴趣的博客、新闻、科技资讯
阅读原文 在惯性聚合中打开

推荐订阅源

博客园 - 三生石上(FineUI控件)
月光博客
月光博客
人人都是产品经理
人人都是产品经理
Google DeepMind News
Google DeepMind News
M
MIT News - Artificial intelligence
Vercel News
Vercel News
MyScale Blog
MyScale Blog
爱范儿
爱范儿
博客园 - 司徒正美
OSCHINA 社区最新新闻
OSCHINA 社区最新新闻
IT之家
IT之家
H
Help Net Security
Last Week in AI
Last Week in AI
阮一峰的网络日志
阮一峰的网络日志
酷 壳 – CoolShell
酷 壳 – CoolShell
L
LangChain Blog
罗磊的独立博客
Stack Overflow Blog
Stack Overflow Blog
宝玉的分享
宝玉的分享
博客园 - 聂微东
云风的 BLOG
云风的 BLOG
J
Java Code Geeks
博客园 - 叶小钗
D
Docker

math.CO updates on arXiv.org

Complement Submodular Information Measures for Balanced and Robust Data Selection A Proof of a Conjecture on Positive and Negative Square Energies of Unicyclic Graphs Laplacian Spectrum of the Weakly Zero-Divisor Graph of a Finite Commutative Ring An identity for second Eulerian numbers via lattice-point counting $t$-tone edge coloring of graphs Constructing Maximal Bumpless Pipedreams for Double Grothendieck Polynomials Mubayi's Polynomial-Ideal Conjecture and Cover-Ideal Turán Methods Implicit Binarization via Complex Phase Dynamics in Combinatorial Optimization The limits of Schur multipliers in Pólya conversion problems for the $q$-permanent function Universality theorems for generalized splines Framing Triangulations for Arbitrary Integer Flow Polytopes On the Common Generalization of Gentle Algebras and Framed Directed Acyclic Graphs The complexity of frugal digraph homomorphisms Chaotic and periodic behavior of jeu de taquin on infinite Young tableaux Enumerating Pattern Avoiding Parking Functions Incidence toric ideals and three-point functions Unique Winning Opening Move in Three-Row Chomp Strong majority colorings of graphs A Balancing Theorem for Spanning Trees of Rectangular Grid Graphs Spectral radius and edge-disjoint connected factors of graphs New invariants for rank metric codes, with applications to the classification of rank two semifields of order 256 Flexible DP-4-coloring of planar graphs without 4-cycles and intersecting triangles Balanced intersection size distributions in projective planes List Reconstruction Problem with List Size Two Is Dimensionality a Barrier for Retrieval Models? The INIEP: Irreducible and Positive Realizations The number of Pfaffian orientations on punctured polygonally cellulated surfaces Explicit Construction of Polytopes whose Ehrhart Polynomials Realize any Given Sign Pattern Finite-state enumeration of adjacency-constrained 132-avoiding permutations AMDS and quantum AMDS Constacyclic codes of length $4p^ς$ over $\mathbb{F}_{{p}^{m}}$
Generalizing matrix representations to fully heterochrono...
Chris Jennings-Shaffer</name> <arxiv:affiliation>Cherith</ · 2025-10-31 · via math.CO updates on arXiv.org

Phylogenetic tree shapes capture fundamental signatures of evolution. We consider ``ranked'' tree shapes, which are equipped with a total order on the internal nodes compatible with the tree graph. Recent work has established an elegant bijection between ranked tree shapes and a class of integer matrices, called \textbf{F}-matrices, defined by simple inequalities. This formulation is for isochronous ranked tree shapes, where all leaves share the same sampling time, such as in the study of ancient human demography from present-day individuals. However, branch lengths of phylogenetic trees can represent units other than calendar time, such as evolutionary distance. A tree equipped with branch lengths quantifying evolutionary distance, called a rooted phylogram, is output by popular maximum-likelihood methods. These trees are broadly relevant, such as to study the affinity maturation of B cells in the immune system. Discretizing time in a rooted phylogram gives a fully heterochronous ranked tree shape, where leaves are part of the total order. Here we extend the \textbf{F}-matrix framework to such fully heterochronous ranked tree shapes. We establish an explicit bijection between a class of \textbf{F}-matrices and the space of such tree shapes. The matrix representation has the key feature that the value at any entry is highly constrained by four previous entries, enabling straightforward enumeration of all valid tree shapes. We also use this framework to develop probabilistic models on ranked tree shapes. Our work extends understanding of combinatorial objects that have a rich history in the literature.