In this paper, we continue our investigation of double sums where the inner sum is binomial but incomplete. We prove many new results for these types of double sums associated with binomial transform pairs. As applications we deduce new identities for double sums involving special numbers like Bernoulli numbers, Fibonacci numbers, harmonic numbers, Catalan numbers and Stirling numbers of the second kind. We also consider families of polynomials like Fibonacci polynomials, Chebyshev polynomials, Bernoulli polynomials, and others. Finally, we state new double sums involving hyperbolic functions.