A lattice $(d,k)$-polytope is the convex hull of a set of points in $\mathbb{R}^d$ whose coordinates are integers ranging between $0$ and $k$. We consider the smallest possible distance $\varepsilon(d,k)$ between two disjoint lattice $(d,k)$-polytopes. We propose an algebraic model for this distance and derive from it an explicit formula for $\varepsilon(2,k)$. Our model also allows for the computation of previously intractable values of $\varepsilon(d,k)$. In particular, we compute $\varepsilon(3,k)$ when $4\leq{k}\leq8$, $\varepsilon(4,k)$ when $2\leq{k}\leq3$, and $\varepsilon(6,1)$.