The enumeration of zero-sum subsequences of a given sequence over finite cyclic groups is one classical topic, which starts from one question of P. Erdős. In this paper, we consider this problem in a more general setting -- finite cyclic semigroups. Let $\mathcal{S}$ be a finite cyclic semigroup. By $\textbf{e}$ we denote the unique idempotent of the semigroup $\mathcal{S}$. Let $T$ be a sequence over the semigroup $\mathcal{S}$, and let $N(T; \textbf{e})$ be the number of distinct subsequences of $T$ with sum being the idempotent $\textbf{e}$. We obtain the lower bound for $N(T; \textbf{e})$ in terms of the length of $T$, and moreover, prove that $T$ contains subsequences with some smooth-structure in case that $N(T; \textbf{e})$ is not large. Our result generalizes the theorem obtained by W. Gao [Discrete Math., 1994] on the enumeration of zero-sum subsequences over finite cyclic groups to the setting of semigroups.