In this paper, we introduce an inversion statistic on the hyperoctahedral group $B_n$ by using an decomposition of a positive root system of this reflection group. Then we prove some combinatorial properties for the inversion statistic. We establish an enumeration system on the group $B_n$ and give an efficient method to uniquely derive any group element known its enumeration order with the help of the inversion table. In addition, we prove that the \textit{flag-major index} is equi-distributed with this inversion statistic on $B_n$.