In this paper, we study tropical-theoretic aspects of the ``rectification algorithm'' on skew Young tableaux. It is shown that the algorithm is interpreted as a time evolution of some tropical integrable system. By using this fact, we construct a new combinatorial map that is essentially equivalent to the rectification algorithm. Some of properties of the rectification can be seen more clearly via this map. For example, the uniqueness of a rectification boils down to an easy combinatorial problem. Our method is mainly based on the two previous researches: the theory of geometric tableaux by Noumi-Yamada, and the study on the relationship between jeu de taquin slides and the ultradiscrete KP equation by Mikami and Katayama-Kakei.