We consider Cantor real numeration system as a frame in which every non-negative real number has a positional representation. The system is defined using a bi-infinite sequence $\Beta=(β_n)_{n\in\Z}$ of real numbers greater than one. We introduce the set of $\Beta$-integers and code the sequence of gaps between consecutive $\Beta$-integers by a symbolic sequence in general over the alphabet $\N$. We show that this sequence is $S$-adic. We focus on alternate base systems, where the sequence $\Beta$ of bases is periodic and characterize alternate bases $\Beta$, in which $\Beta$-integers can be coded using a symbolic sequence $v_{\Beta}$ over a finite alphabet. With these so-called Parry alternate bases we associate some substitutions and show that $v_\Beta$ is a fixed point of their composition. The paper generalizes results of Fabre and Burdík et al.\ obtained for the Rényi numerations systems, i.e., in the case when the Cantor base $\Beta$ is a constant sequence.