The Ehrhart quasi-polynomial of a rational polytope $P$ is a fundamental invariant counting lattice points in integer dilates of $P$. The quasi-period of this quasi-polynomial divides the denominator of $P$ but is not always equal to it: this situation is called quasi-period collapse. Polytopes experiencing quasi-period collapse appear widely across algebra and geometry, and yet the phenomenon remains largely mysterious. Using techniques from algebraic geometry - specifically the $\mathbb{Q}$-Gorenstein deformation theory of orbifold del Pezzo surfaces - we explain quasi-period collapse for rational polygons dual to Fano polygons and describe explicitly the discrepancy between the quasi-period and the denominator.