High dimensional data is often assumed to be concentrated on or near a low-dimensional manifold. Autoencoders (AE) is a popular technique to learn representations of such data by pushing it through a neural network with a low dimension bottleneck while minimizing a reconstruction error. Using high capacity AE often leads to a large collection of minimizers, many of which represent a low dimensional manifold that fits the data well but generalizes poorly. Two sources of bad generalization are: extrinsic, where the learned manifold possesses extraneous parts that are far from the data; and intrinsic, where the encoder and decoder introduce arbitrary distortion in the low dimensional parameterization. An approach taken to alleviate these issues is to add a regularizer that favors a particular solution; common regularizers promote sparsity, small derivatives, or robustness to noise. In this paper, we advocate an isometry (i.e., local distance preserving) regularizer. Specifically, our regularizer encourages: (i) the decoder to be an isometry; and (ii) the encoder to be the decoder's pseudo-inverse, that is, the encoder extends the inverse of the decoder to the ambient space by orthogonal projection. In a nutshell, (i) and (ii) fix both intrinsic and extrinsic degrees of freedom and provide a non-linear generalization to principal component analysis (PCA). Experimenting with the isometry regularizer on dimensionality reduction tasks produces useful low-dimensional data representations.