Imputation is a popular technique for handling missing data. We consider a nonparametric approach to imputation using the kernel ridge regression technique and propose consistent variance estimation. The proposed variance estimator is based on a linearization approach which employs the entropy method to estimate the density ratio. The root-n consistency of the imputation estimator is established when a Sobolev space is utilized in the kernel ridge regression imputation, which enables us to develop the proposed variance estimator. Synthetic data experiments are presented to confirm our theory.