Learning complex network dynamics is fundamental to understanding, modelling and controlling real-world complex systems. There are two main problems in the task of predicting the dynamic evolution of complex networks: on the one hand, existing methods usually use simple graphs to describe the relationships in complex networks; however, this approach can only capture pairwise relationships, while there may be rich non-pairwise structured relationships in the network. First-order GNNs have difficulty in capturing dynamic non-pairwise relationships. On the other hand, theoretical prediction models lack accuracy and data-driven prediction models lack interpretability. To address the above problems, this paper proposes a higher-order network dynamics identification method for long-term dynamic prediction of complex networks. Firstly, to address the problem that traditional graph machine learning can only deal with pairwise relations, dynamic hypergraph learning is introduced to capture the higher-order non-pairwise relations among complex networks and improve the accuracy of complex network modelling. Then, a dual-driven dynamic prediction module for physical data is proposed. The Koopman operator theory is introduced to transform the nonlinear dynamical differential equations for the dynamic evolution of complex networks into linear systems for solving. Meanwhile, the physical information neural differential equation method is utilised to ensure that the dynamic evolution conforms to the physical laws. The dual-drive dynamic prediction module ensures both accuracy and interpretability of the prediction. Validated on public datasets and self-built industrial chain network datasets, the experimental results show that the method in this paper has good prediction accuracy and long-term prediction performance.