The food supply chain, following its globalization, has become very complex. Such complexities, introduce factors that influence adversely the quality of intermediate and final products. Strict constraints regarding parameters such as maintenance temperatures and transportation times must be respected in order to ensure top quality and reduce to a minimum the detrimental effects to public health. This is a multi-factorial endeavor and all of the involved stakeholders must accept and manage the logistics burden to achieve the best possible results. However, such burden comes together with additional complexities and costs regarding data storage, business process management and company specific standard operating procedures and as such, automated methods must be devised to reduce the impact of such intrusive operations. For the above reasons, in this paper we present BioTrak: a platform capable of registering and visualizing the whole chain of transformation and transportation processes including the monitoring of cold chain logistics of food ingredients starting from the raw material producers until the final product arrives to the end-consumer. The platform includes Business Process Modelling methods to aid food supply chain stakeholders to optimize their processes and also integrates a blockchain for guaranteeing the integrity, transparency and accountability of the data.